Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs72813571 chr2:61599786 T/C 6.44E-5 177 24.1 30.93 10.3 KM Plot
PCPG rs72813572 chr2:61599888 G/A 6.81E-5 177 23.43 30.33 10.3 KM Plot
PCPG rs72836090 chr17:50309650 A/G 5.96E-5 178 25.4 29.7 14.47 KM Plot
PCPG rs7286982 chr22:25619025 A/C 0.000175 178 25.17 27.27 18.82 KM Plot
PCPG rs7287892 chr22:21291329 C/A 7.74E-5 177 12.57 31.68 25.2 KM Plot
PCPG rs72887782 chr17:74933161 A/G 1.98E-5 170 24.77 25.87 25.17 KM Plot
PCPG rs7290490 chr22:21291263 T/C 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs72952700 chr2:217030000 G/A 6.65E-5 177 24.85 28.87 2.93 KM Plot
PCPG rs72954633 chr2:217049597 T/C 7.45E-5 175 25 29.43 2.93 KM Plot
PCPG rs72959038 chr2:228480549 G/A 6.79E-11 175 24.53 36.73 10.3 KM Plot
PCPG rs72975283 chr11:103966694 C/T 6.89E-11 175 25.87 16.87 10.3 KM Plot
PCPG rs73054651 chr3:182610029 A/G 1.06E-5 174 25.87 27.2 11.78 KM Plot
PCPG rs73054652 chr3:182610584 G/A 1.06E-5 174 25.87 27.2 11.78 KM Plot
PCPG rs73054663 chr3:182633062 C/T 0.000133 175 25.87 27.2 13.27 KM Plot
PCPG rs73066801 chr12:13084119 C/T 0.000183 171 25.17 25.43 21.03 KM Plot